I would like there to be an option so strokeit would automatically be disabled in full screen programs, such as games. That way you wouldn't have to go through and individually disable it for each game.
There's really no practical or efficient way to detect full screen programs, so this is not going to happen. If you don't want to specifically disable StrokeIt in each of your games, perhaps it would be more efficent for you to use the "Only enable StrokeIt is configured applications" option.